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download_all_models.sh - download all pretrained models to run automatic qc.download_minimal_models.sh - download QCResNET-18 with reference pretrained model to run automatic qc (43mb).for inference on freeserfer files: nibabel.for inference directly on minc files minc2-simple.trainig dependencies: scikit-image tensorboard,.Training in python directory run_all_experiments.sh - will try to train all networks.Inference using Freesurfer output: python3 python/aqc_apply.py -net -freesurfer.Inference using minc files in stereotaxic space: python3 python/aqc_apply.py -net -volume.Inference using jpeg files generated by minc_aqc.pl script: python3 python/aqc_apply.py -net -image.